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Enzyme kinetics from elementary rate constants

UKChO Round 2 · IChO · unreviewed

Enzyme mechanism with all three elementary rate constants, [E]₀ and [S] known; steady state on ES. Find the initial rate.

Worked example

For E + S ⇌ ES (k₁ = 2.4 × 10⁷ dm³ mol⁻¹ s⁻¹, k₋₁ = 3000 s⁻¹) and ES → E + P (k₂ = 2100 s⁻¹), find v₀ at [E]₀ = 4.1 × 10⁻⁸ mol dm⁻³ and [S] = 9.5 × 10⁻⁵ mol dm⁻³.

  1. 1. Add k₋₁ + k₂

    = 5100 s⁻¹

  2. 2. Divide (k₋₁ + k₂) ÷ k₁ → K_M

    = 0.2125 mmol dm⁻³

  3. 3. Multiply k₂ × [E]₀ → V_max

    = 8.610 × 10⁻⁵ mol dm⁻³ s⁻¹

  4. 4. Multiply V_max × [S] → V_max[S]

    = 0.008179 mol² m⁻⁶ s⁻¹

  5. 5. Add K_M + [S]

    = 0.3075 mmol dm⁻³

  6. 6. Divide V_max[S] ÷ (K_M + [S]) → v₀

    = 2.660 × 10⁻⁵ mol dm⁻³ s⁻¹

Answer: v₀ = 2.66 × 10⁻⁵ mol dm⁻³ s⁻¹

Method

Steady state on ES gives K_M = (k₋₁ + k₂)/k₁ and V_max = k₂[E]₀; then v₀ = V_max[S]/(K_M + [S]).

Common mistakes

  • That uses K_S = k₋₁/k₁ (pre-equilibrium). With k₂ comparable to k₋₁, the steady-state K_M = (k₋₁ + k₂)/k₁.

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